Difference between revisions of "R"
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---- | ---- | ||
| − | {{Package-Introduction| | + | {{Package-Introduction|R is GNU S, a language and environment for statistical computing and graphics.|http://www.r-project.org/}} |
= Dependencies = | = Dependencies = | ||
| Line 17: | Line 17: | ||
== Optional == | == Optional == | ||
| − | * [[ | + | * [[ATLAS]] |
* [[LAPACK]] | * [[LAPACK]] | ||
* [[TCL]] | * [[TCL]] | ||
| Line 28: | Line 28: | ||
= Configuration Information = | = Configuration Information = | ||
| − | + | {{Note|You must include CFLAGS<nowiki>=</nowiki>"-std<nowiki>=</nowiki>gnu99" or R will have problems installing add-on packages.}} | |
| − | < | ||
{|text-align="left" | {|text-align="left" | ||
| Line 35: | Line 34: | ||
|<i>R_PDFVIEWER=<PDFVIEWER>:</i> By default the R configure script only looks for acroread, acroread4, xpdf, gv, gnome-gv, ggv, kghostview, open, and gpdf. This covers the majority of pdf viewers, but not all; for example, evince. | |<i>R_PDFVIEWER=<PDFVIEWER>:</i> By default the R configure script only looks for acroread, acroread4, xpdf, gv, gnome-gv, ggv, kghostview, open, and gpdf. This covers the majority of pdf viewers, but not all; for example, evince. | ||
|-valign="top" | |-valign="top" | ||
| − | |<i>--libdir=<LIBDIR>:</i> On a <b>Pure64</b> system, R will install it's libraries in <PREFIX>/lib64 by | + | |<i>--libdir=<LIBDIR>:</i> On a <b>Pure64</b> CLFS system, R will install it's libraries in <PREFIX>/lib64 as prescribed by the [http://www.pathname.com/fhs/pub/fhs-2.3.html#LIB64 FHS]. Pass --libdir=<PREFIX>/lib to put the libraries in the Pure64 CLFS location. |
|-valign="top" | |-valign="top" | ||
|<i>--enable-R-shlib:</i> Build the shared R library libR. | |<i>--enable-R-shlib:</i> Build the shared R library libR. | ||
|-valign="top" | |-valign="top" | ||
| − | |<i>--enable-BLAS-shlib:</i> Build the shared | + | |<i>--enable-BLAS-shlib:</i> Build the shared ATLAS library provided by R. |
|-valign="top" | |-valign="top" | ||
| − | |<i>--with-blas=</path/to/BLAS/library>:</i> Use the system-wide | + | |<i>--with-blas=</path/to/BLAS/library>:</i> Use the system-wide ATLAS library. |
|-valign="top" | |-valign="top" | ||
| − | |<i>--with-lapack=</path/to/LAPACK/library:</i> Use the system-wide LAPACK library. If using the [[ACML]] library for | + | |<i>--with-lapack=</path/to/LAPACK/library:</i> Use the system-wide LAPACK library. If using the [[ACML]] library for ATLAS and LAPACK, do not a pass a path, simply provide the option. |
|} | |} | ||
| Line 126: | Line 125: | ||
|The R program for statistical computing and graphics. | |The R program for statistical computing and graphics. | ||
|} | |} | ||
| + | |||
| + | [[Category:Science_Engineering]] | ||
Latest revision as of 04:35, 27 June 2009
| Download Source: | http://lib.stat.cmu.edu/R/CRAN/src/base/R-2/R-2.9.1.tar.gz |
|---|
Contents
Introduction to R
R is GNU S, a language and environment for statistical computing and graphics.
Project Homepage: http://www.r-project.org/
Dependencies
Required
- GMP
- MPFR
- GCC compiled to include F77 (<4.X.X) or gfortran (>=4.X.X). f2c won't work on a 64-bit architecture.
Optional
Configuration Information
Note
You must include CFLAGS="-std=gnu99" or R will have problems installing add-on packages.
| R_PDFVIEWER=<PDFVIEWER>: By default the R configure script only looks for acroread, acroread4, xpdf, gv, gnome-gv, ggv, kghostview, open, and gpdf. This covers the majority of pdf viewers, but not all; for example, evince. |
| --libdir=<LIBDIR>: On a Pure64 CLFS system, R will install it's libraries in <PREFIX>/lib64 as prescribed by the FHS. Pass --libdir=<PREFIX>/lib to put the libraries in the Pure64 CLFS location. |
| --enable-R-shlib: Build the shared R library libR. |
| --enable-BLAS-shlib: Build the shared ATLAS library provided by R. |
| --with-blas=</path/to/BLAS/library>: Use the system-wide ATLAS library. |
| --with-lapack=</path/to/LAPACK/library: Use the system-wide LAPACK library. If using the ACML library for ATLAS and LAPACK, do not a pass a path, simply provide the option. |
Non-Multilib
Compile the package:
CFLAGS="-std=gnu99" ./configure --prefix=/usr --libdir=/usr/lib \ --enable-R-profiling --enable-R-shlib --enable-linux-lfs \ --with-tcltk --with-tcl-config=/usr/lib/tclConfig.sh \ --with-tk-config=/usr/lib/tkConfig.sh && make
Install the package:
make install
Build and install the info pages for R:
make install-info
Build and install the DVI documentation for R:
make install-dvi
Build and install the PDF documentation for R:
make install-pdf
Copy the R icons to /usr/share/pixmaps:
cp -v doc/html/logo* /usr/share/pixmaps
Multilib
32Bit
Compile the package:
CC="gcc ${BUILD32}" CXX="g++ ${BUILD32}" CFLAGS="-std=gnu99" ./configure \
--prefix=/opt/R --libdir=/opt/R/lib --enable-R-profiling \
--enable-R-shlib --enable-linux-lfs --with-tcltk \
--with-tcl-config=/usr/lib/tclConfig.sh \
--with-tk-config=/usr/lib/tkConfig.sh &&
make
Install the package:
make install
64Bit
Compile the package:
CC="gcc ${BUILD64}" CXX="g++ ${BUILD64}" CFLAGS="-std=gnu99" ./configure \
--prefix=/opt/R --libdir=/opt/R/lib64 --enable-R-profiling \
--enable-R-shlib --enable-linux-lfs --with-tcltk \
--with-tcl-config=/usr/lib64/tclConfig.sh \
--with-tk-config=/usr/lib64/tkConfig.sh &&
make
Install the package:
make install
Build and install the info pages for R:
make install-info
Build and install the DVI documentation for R:
make install-dvi
Build and install the PDF documentation for R:
make install-pdf
Copy the R icons to /usr/share/pixmaps:
cp -v doc/html/logo* /usr/share/pixmaps
Contents
| Installed Directories: | <PREFIX>/{bin,lib,man} |
|---|---|
| Installed Programs: | R |
| Installed Libraries: | libR.so |
Short Description
| R | The R program for statistical computing and graphics. |
|---|
