Difference between revisions of "R"

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|-
 
|-
 
!Download Source:
 
!Download Source:
−
| http://lib.stat.cmu.edu/R/CRAN/src/base/R-2/R-2.4.0.tar.gz
+
| http://lib.stat.cmu.edu/R/CRAN/src/base/R-2/R-{{R-Version}}.tar.gz
 
|}
 
|}
  
−
== Introduction to R ==
+
----
  
−
R is GNU S, a language and environment for statistical computing and graphics.
+
{{Package-Introduction|R is GNU S, a language and environment for statistical computing and graphics.|http://www.r-project.org/}}
  
−
== Dependencies ==
+
= Dependencies =
  
−
=== Required ===
+
== Required ==
 
* [[GMP]]
 
* [[GMP]]
 
* [[MPFR]]
 
* [[MPFR]]
−
* [[GCC]] compiled to include F77 (<4.X.X) or gfortran (>=4.X.X).  f2c won't work on a 64-bit arch.
+
* [[GCC]] compiled to include F77 (<4.X.X) or gfortran (>=4.X.X).  f2c won't work on a 64-bit architecture.
−
=== Optional ===
+
 
−
* [[BLAS]]
+
== Optional ==
 +
* [[ATLAS]]
 
* [[LAPACK]]
 
* [[LAPACK]]
 
* [[TCL]]
 
* [[TCL]]
Line 24: Line 25:
 
* [[libpng]]
 
* [[libpng]]
 
* [[libjpeg]]
 
* [[libjpeg]]
−
* Readline
+
* [[JDK]]
−
* Perl
 
  
−
== Non-Multilib ==
+
= Configuration Information =
 +
{{Note|You must include CFLAGS<nowiki>=</nowiki>"-std<nowiki>=</nowiki>gnu99" or R will have problems installing add-on packages.}}
 +
 
 +
{|text-align="left"
 +
|-valign="top"
 +
|<i>R_PDFVIEWER=<PDFVIEWER>:</i> By default the R configure script only looks for acroread, acroread4, xpdf, gv, gnome-gv, ggv, kghostview, open, and gpdf.  This covers the majority of pdf viewers, but not all; for example, evince.
 +
|-valign="top"
 +
|<i>--libdir=<LIBDIR>:</i> On a <b>Pure64</b> CLFS system, R will install it's libraries in <PREFIX>/lib64 as prescribed by the [http://www.pathname.com/fhs/pub/fhs-2.3.html#LIB64 FHS].  Pass --libdir=<PREFIX>/lib to put the libraries in the Pure64 CLFS location.
 +
|-valign="top"
 +
|<i>--enable-R-shlib:</i> Build the shared R library libR.
 +
|-valign="top"
 +
|<i>--enable-BLAS-shlib:</i> Build the shared ATLAS library provided by R.
 +
|-valign="top"
 +
|<i>--with-blas=</path/to/BLAS/library>:</i> Use the system-wide ATLAS library.
 +
|-valign="top"
 +
|<i>--with-lapack=</path/to/LAPACK/library:</i> Use the system-wide LAPACK library.  If using the [[ACML]] library for ATLAS and LAPACK, do not a pass a path, simply provide the option.
 +
|}
 +
 
 +
= Non-Multilib =
  
 
Compile the package:
 
Compile the package:
  
−
   CFLAGS="-std=gnu99" ./configure --prefix=/opt/R --libdir=/opt/R/lib \
+
   CFLAGS="-std=gnu99" ./configure --prefix=/usr --libdir=/usr/lib \
 
   --enable-R-profiling --enable-R-shlib --enable-linux-lfs \
 
   --enable-R-profiling --enable-R-shlib --enable-linux-lfs \
 
   --with-tcltk --with-tcl-config=/usr/lib/tclConfig.sh \
 
   --with-tcltk --with-tcl-config=/usr/lib/tclConfig.sh \
 
   --with-tk-config=/usr/lib/tkConfig.sh &&
 
   --with-tk-config=/usr/lib/tkConfig.sh &&
 
   make
 
   make
−
 
−
You must include CFLAGS="-std=gnu99" or R will have problems installing add-on packages.  If you have a '''Pure 64''' system, R will install it's libraries in /opt/R/lib64 by default.  If you are using a system-wide [[BLAS]] and/or [[LAPACK]] library, add --with-blas and/or --with-lapack to the configure options.
 
  
 
Install the package:
 
Install the package:
 +
  make install
  
−
   make install
+
Build and install the info pages for R:
 +
  make install-info
 +
Build and install the DVI documentation for R:
 +
   make install-dvi
 +
Build and install the PDF documentation for R:
 +
  make install-pdf
 +
Copy the R icons to /usr/share/pixmaps:
 +
  cp -v doc/html/logo* /usr/share/pixmaps
  
−
== Multilib ==
+
= Multilib =
  
−
=== 32Bit ===
+
== 32Bit ==
  
 
Compile the package:
 
Compile the package:
−
 
+
   CC="gcc ${BUILD32}" CXX="g++ ${BUILD32}" CFLAGS="-std=gnu99" ./configure \
−
   CC="gcc ${BUILD32} CFLAGS="-std=gnu99" ./configure \
 
 
   --prefix=/opt/R --libdir=/opt/R/lib --enable-R-profiling \
 
   --prefix=/opt/R --libdir=/opt/R/lib --enable-R-profiling \
 
   --enable-R-shlib --enable-linux-lfs --with-tcltk \
 
   --enable-R-shlib --enable-linux-lfs --with-tcltk \
Line 55: Line 78:
 
   --with-tk-config=/usr/lib/tkConfig.sh &&
 
   --with-tk-config=/usr/lib/tkConfig.sh &&
 
   make
 
   make
−
 
−
You must include CFLAGS="-std=gnu99" or R will have problems installing add-on packages.  If you are using a system-wide [[BLAS]] and/or [[LAPACK]] library, add --with-blas and/or --with-lapack to the configure options.
 
  
 
Install the package:
 
Install the package:
−
 
 
   make install
 
   make install
  
−
=== 64Bit ===
+
== 64Bit ==
  
 
Compile the package:
 
Compile the package:
−
 
+
   CC="gcc ${BUILD64}" CXX="g++ ${BUILD64}" CFLAGS="-std=gnu99" ./configure \
−
   CC="gcc ${BUILD64} CFLAGS="-std=gnu99" ./configure \
+
   --prefix=/opt/R --libdir=/opt/R/lib64 --enable-R-profiling \
−
   --prefix=/opt/R --libdir=/opt/R/lib --enable-R-profiling \
 
 
   --enable-R-shlib --enable-linux-lfs --with-tcltk \
 
   --enable-R-shlib --enable-linux-lfs --with-tcltk \
−
   --with-tcl-config=/usr/lib/tclConfig.sh \
+
   --with-tcl-config=/usr/lib64/tclConfig.sh \
−
   --with-tk-config=/usr/lib/tkConfig.sh &&
+
   --with-tk-config=/usr/lib64/tkConfig.sh &&
 
   make
 
   make
−
 
−
You must include CFLAGS="-std=gnu99" or R will have problems installing add-on packages.  If you are using a system-wide [[BLAS]] and/or [[LAPACK]] library, add --with-blas and/or --with-lapack to the configure options.
 
  
 
Install the package:
 
Install the package:
−
 
 
   make install
 
   make install
−
 
−
== Documentation ==
 
  
 
Build and install the info pages for R:
 
Build and install the info pages for R:
−
 
 
   make install-info
 
   make install-info
−
 
 
Build and install the DVI documentation for R:
 
Build and install the DVI documentation for R:
−
 
 
   make install-dvi
 
   make install-dvi
−
 
 
Build and install the PDF documentation for R:
 
Build and install the PDF documentation for R:
 +
  make install-pdf
 +
Copy the R icons to /usr/share/pixmaps:
 +
  cp -v doc/html/logo* /usr/share/pixmaps
  
−
  make install-pdf
+
= Contents =
  
−
Copy the R icons to /usr/share/pixmaps:
+
{|style="text-align: left"
 +
|-valign="top"
 +
!Installed Directories:
 +
| <PREFIX>/{bin,lib,man}
 +
|-valign="top"
 +
!Installed Programs:
 +
|R
 +
|-valign="top"
 +
!Installed Libraries:
 +
|libR.so
 +
|}
  
−
  cp -v doc/html/logo* /usr/share/pixmaps
+
== Short Description ==
  
−
== Contents ==
+
{|style="text-align: left"
 +
|-valign="top"
 +
!R
 +
|The R program for statistical computing and graphics.
 +
|}
  
−
* Installed Programs: R
+
[[Category:Science_Engineering]]
−
* Installed Libraries: libR.so
 
−
* Installed Directories: <PREFIX>/{bin,lib,man}
 

Latest revision as of 04:35, 27 June 2009

Download Source: http://lib.stat.cmu.edu/R/CRAN/src/base/R-2/R-2.9.1.tar.gz

Introduction to R

R is GNU S, a language and environment for statistical computing and graphics.

Project Homepage: http://www.r-project.org/

Dependencies

Required

  • GMP
  • MPFR
  • GCC compiled to include F77 (<4.X.X) or gfortran (>=4.X.X). f2c won't work on a 64-bit architecture.

Optional

Configuration Information

Caution.png

Note

You must include CFLAGS="-std=gnu99" or R will have problems installing add-on packages.
R_PDFVIEWER=<PDFVIEWER>: By default the R configure script only looks for acroread, acroread4, xpdf, gv, gnome-gv, ggv, kghostview, open, and gpdf. This covers the majority of pdf viewers, but not all; for example, evince.
--libdir=<LIBDIR>: On a Pure64 CLFS system, R will install it's libraries in <PREFIX>/lib64 as prescribed by the FHS. Pass --libdir=<PREFIX>/lib to put the libraries in the Pure64 CLFS location.
--enable-R-shlib: Build the shared R library libR.
--enable-BLAS-shlib: Build the shared ATLAS library provided by R.
--with-blas=</path/to/BLAS/library>: Use the system-wide ATLAS library.
--with-lapack=</path/to/LAPACK/library: Use the system-wide LAPACK library. If using the ACML library for ATLAS and LAPACK, do not a pass a path, simply provide the option.

Non-Multilib

Compile the package: 

 CFLAGS="-std=gnu99" ./configure --prefix=/usr --libdir=/usr/lib \
 --enable-R-profiling --enable-R-shlib --enable-linux-lfs \
 --with-tcltk --with-tcl-config=/usr/lib/tclConfig.sh \
 --with-tk-config=/usr/lib/tkConfig.sh &&
 make

Install the package: 

 make install

Build and install the info pages for R: 

 make install-info

Build and install the DVI documentation for R: 

 make install-dvi

Build and install the PDF documentation for R: 

 make install-pdf

Copy the R icons to /usr/share/pixmaps: 

 cp -v doc/html/logo* /usr/share/pixmaps

Multilib

32Bit

Compile the package: 

 CC="gcc ${BUILD32}" CXX="g++ ${BUILD32}" CFLAGS="-std=gnu99" ./configure \
 --prefix=/opt/R --libdir=/opt/R/lib --enable-R-profiling \
 --enable-R-shlib --enable-linux-lfs --with-tcltk \
 --with-tcl-config=/usr/lib/tclConfig.sh \
 --with-tk-config=/usr/lib/tkConfig.sh &&
 make

Install the package: 

 make install

64Bit

Compile the package: 

 CC="gcc ${BUILD64}" CXX="g++ ${BUILD64}" CFLAGS="-std=gnu99" ./configure \
 --prefix=/opt/R --libdir=/opt/R/lib64 --enable-R-profiling \
 --enable-R-shlib --enable-linux-lfs --with-tcltk \
 --with-tcl-config=/usr/lib64/tclConfig.sh \
 --with-tk-config=/usr/lib64/tkConfig.sh &&
 make

Install the package: 

 make install

Build and install the info pages for R: 

 make install-info

Build and install the DVI documentation for R: 

 make install-dvi

Build and install the PDF documentation for R: 

 make install-pdf

Copy the R icons to /usr/share/pixmaps: 

 cp -v doc/html/logo* /usr/share/pixmaps

Contents

Installed Directories: <PREFIX>/{bin,lib,man}
Installed Programs: R
Installed Libraries: libR.so

Short Description

R The R program for statistical computing and graphics.
Retrieved from "?title=R&oldid=18514"