Difference between revisions of "R"
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!Download Source: | !Download Source: | ||
− | | http://lib.stat.cmu.edu/R/CRAN/src/base/R-2/R- | + | | http://lib.stat.cmu.edu/R/CRAN/src/base/R-2/R-{{R-Version}}.tar.gz |
|} | |} | ||
− | + | ---- | |
− | + | {{Package-Introduction|R is GNU S, a language and environment for statistical computing and graphics.|http://www.r-project.org/}} | |
− | === Required | + | = Dependencies = |
+ | |||
+ | == Required == | ||
* [[GMP]] | * [[GMP]] | ||
* [[MPFR]] | * [[MPFR]] | ||
− | * GCC compiled to include F77 (<4.X.X) or gfortran (>=4.X.X). f2c won't work on a 64-bit | + | * [[GCC]] compiled to include F77 (<4.X.X) or gfortran (>=4.X.X). f2c won't work on a 64-bit architecture. |
− | + | ||
− | * [[ | + | == Optional == |
+ | * [[ATLAS]] | ||
* [[LAPACK]] | * [[LAPACK]] | ||
− | * [[ | + | * [[TCL]] |
* [[Tk]] | * [[Tk]] | ||
* [[X Window System]] | * [[X Window System]] | ||
Line 22: | Line 25: | ||
* [[libpng]] | * [[libpng]] | ||
* [[libjpeg]] | * [[libjpeg]] | ||
− | * | + | * [[JDK]] |
− | |||
− | == | + | = Configuration Information = |
+ | {{Note|You must include CFLAGS<nowiki>=</nowiki>"-std<nowiki>=</nowiki>gnu99" or R will have problems installing add-on packages.}} | ||
− | + | {|text-align="left" | |
+ | |-valign="top" | ||
+ | |<i>R_PDFVIEWER=<PDFVIEWER>:</i> By default the R configure script only looks for acroread, acroread4, xpdf, gv, gnome-gv, ggv, kghostview, open, and gpdf. This covers the majority of pdf viewers, but not all; for example, evince. | ||
+ | |-valign="top" | ||
+ | |<i>--libdir=<LIBDIR>:</i> On a <b>Pure64</b> CLFS system, R will install it's libraries in <PREFIX>/lib64 as prescribed by the [http://www.pathname.com/fhs/pub/fhs-2.3.html#LIB64 FHS]. Pass --libdir=<PREFIX>/lib to put the libraries in the Pure64 CLFS location. | ||
+ | |-valign="top" | ||
+ | |<i>--enable-R-shlib:</i> Build the shared R library libR. | ||
+ | |-valign="top" | ||
+ | |<i>--enable-BLAS-shlib:</i> Build the shared ATLAS library provided by R. | ||
+ | |-valign="top" | ||
+ | |<i>--with-blas=</path/to/BLAS/library>:</i> Use the system-wide ATLAS library. | ||
+ | |-valign="top" | ||
+ | |<i>--with-lapack=</path/to/LAPACK/library:</i> Use the system-wide LAPACK library. If using the [[ACML]] library for ATLAS and LAPACK, do not a pass a path, simply provide the option. | ||
+ | |} | ||
− | + | = Non-Multilib = | |
− | |||
− | |||
− | |||
− | |||
− | + | Compile the package: | |
− | |||
− | |||
− | + | CFLAGS="-std=gnu99" ./configure --prefix=/usr --libdir=/usr/lib \ | |
− | + | --enable-R-profiling --enable-R-shlib --enable-linux-lfs \ | |
− | + | --with-tcltk --with-tcl-config=/usr/lib/tclConfig.sh \ | |
+ | --with-tk-config=/usr/lib/tkConfig.sh && | ||
+ | make | ||
Install the package: | Install the package: | ||
+ | make install | ||
− | + | Build and install the info pages for R: | |
+ | make install-info | ||
+ | Build and install the DVI documentation for R: | ||
+ | make install-dvi | ||
+ | Build and install the PDF documentation for R: | ||
+ | make install-pdf | ||
+ | Copy the R icons to /usr/share/pixmaps: | ||
+ | cp -v doc/html/logo* /usr/share/pixmaps | ||
− | + | = Multilib = | |
− | + | == 32Bit == | |
Compile the package: | Compile the package: | ||
− | + | CC="gcc ${BUILD32}" CXX="g++ ${BUILD32}" CFLAGS="-std=gnu99" ./configure \ | |
− | + | --prefix=/opt/R --libdir=/opt/R/lib --enable-R-profiling \ | |
− | + | --enable-R-shlib --enable-linux-lfs --with-tcltk \ | |
− | + | --with-tcl-config=/usr/lib/tclConfig.sh \ | |
− | + | --with-tk-config=/usr/lib/tkConfig.sh && | |
− | + | make | |
− | |||
− | |||
− | |||
Install the package: | Install the package: | ||
+ | make install | ||
− | + | == 64Bit == | |
− | |||
− | |||
Compile the package: | Compile the package: | ||
+ | CC="gcc ${BUILD64}" CXX="g++ ${BUILD64}" CFLAGS="-std=gnu99" ./configure \ | ||
+ | --prefix=/opt/R --libdir=/opt/R/lib64 --enable-R-profiling \ | ||
+ | --enable-R-shlib --enable-linux-lfs --with-tcltk \ | ||
+ | --with-tcl-config=/usr/lib64/tclConfig.sh \ | ||
+ | --with-tk-config=/usr/lib64/tkConfig.sh && | ||
+ | make | ||
− | + | Install the package: | |
− | + | make install | |
− | |||
− | |||
− | |||
− | |||
− | + | Build and install the info pages for R: | |
+ | make install-info | ||
+ | Build and install the DVI documentation for R: | ||
+ | make install-dvi | ||
+ | Build and install the PDF documentation for R: | ||
+ | make install-pdf | ||
+ | Copy the R icons to /usr/share/pixmaps: | ||
+ | cp -v doc/html/logo* /usr/share/pixmaps | ||
− | + | = Contents = | |
− | + | {|style="text-align: left" | |
− | + | |-valign="top" | |
− | + | !Installed Directories: | |
+ | | <PREFIX>/{bin,lib,man} | ||
+ | |-valign="top" | ||
+ | !Installed Programs: | ||
+ | |R | ||
+ | |-valign="top" | ||
+ | !Installed Libraries: | ||
+ | |libR.so | ||
+ | |} | ||
− | + | == Short Description == | |
− | + | {|style="text-align: left" | |
− | + | |-valign="top" | |
− | + | !R | |
− | + | |The R program for statistical computing and graphics. | |
− | + | |} | |
− | |||
− | |||
− | + | [[Category:Science_Engineering]] |
Latest revision as of 05:35, 27 June 2009
Download Source: | http://lib.stat.cmu.edu/R/CRAN/src/base/R-2/R-2.9.1.tar.gz |
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Contents
Introduction to R
R is GNU S, a language and environment for statistical computing and graphics.
Project Homepage: http://www.r-project.org/
Dependencies
Required
- GMP
- MPFR
- GCC compiled to include F77 (<4.X.X) or gfortran (>=4.X.X). f2c won't work on a 64-bit architecture.
Optional
Configuration Information
R_PDFVIEWER=<PDFVIEWER>: By default the R configure script only looks for acroread, acroread4, xpdf, gv, gnome-gv, ggv, kghostview, open, and gpdf. This covers the majority of pdf viewers, but not all; for example, evince. |
--libdir=<LIBDIR>: On a Pure64 CLFS system, R will install it's libraries in <PREFIX>/lib64 as prescribed by the FHS. Pass --libdir=<PREFIX>/lib to put the libraries in the Pure64 CLFS location. |
--enable-R-shlib: Build the shared R library libR. |
--enable-BLAS-shlib: Build the shared ATLAS library provided by R. |
--with-blas=</path/to/BLAS/library>: Use the system-wide ATLAS library. |
--with-lapack=</path/to/LAPACK/library: Use the system-wide LAPACK library. If using the ACML library for ATLAS and LAPACK, do not a pass a path, simply provide the option. |
Non-Multilib
Compile the package:
CFLAGS="-std=gnu99" ./configure --prefix=/usr --libdir=/usr/lib \ --enable-R-profiling --enable-R-shlib --enable-linux-lfs \ --with-tcltk --with-tcl-config=/usr/lib/tclConfig.sh \ --with-tk-config=/usr/lib/tkConfig.sh && make
Install the package:
make install
Build and install the info pages for R:
make install-info
Build and install the DVI documentation for R:
make install-dvi
Build and install the PDF documentation for R:
make install-pdf
Copy the R icons to /usr/share/pixmaps:
cp -v doc/html/logo* /usr/share/pixmaps
Multilib
32Bit
Compile the package:
CC="gcc ${BUILD32}" CXX="g++ ${BUILD32}" CFLAGS="-std=gnu99" ./configure \ --prefix=/opt/R --libdir=/opt/R/lib --enable-R-profiling \ --enable-R-shlib --enable-linux-lfs --with-tcltk \ --with-tcl-config=/usr/lib/tclConfig.sh \ --with-tk-config=/usr/lib/tkConfig.sh && make
Install the package:
make install
64Bit
Compile the package:
CC="gcc ${BUILD64}" CXX="g++ ${BUILD64}" CFLAGS="-std=gnu99" ./configure \ --prefix=/opt/R --libdir=/opt/R/lib64 --enable-R-profiling \ --enable-R-shlib --enable-linux-lfs --with-tcltk \ --with-tcl-config=/usr/lib64/tclConfig.sh \ --with-tk-config=/usr/lib64/tkConfig.sh && make
Install the package:
make install
Build and install the info pages for R:
make install-info
Build and install the DVI documentation for R:
make install-dvi
Build and install the PDF documentation for R:
make install-pdf
Copy the R icons to /usr/share/pixmaps:
cp -v doc/html/logo* /usr/share/pixmaps
Contents
Installed Directories: | <PREFIX>/{bin,lib,man} |
---|---|
Installed Programs: | R |
Installed Libraries: | libR.so |
Short Description
R | The R program for statistical computing and graphics. |
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